Julia
This is a list of resources and articles about the Julia language.
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News
30/8/2024 10:35 MicroGrad.jl: Part 1 ChainRules: An extensive tutorial on automatic differentiation in Julia in the context of machine learning.
29/8/2024 22:57 New symbolic solver for Symbolics.jl: This notice in the Julia Discourse discussion group announces the merge of a new solver that significantly increases Symbolics’ capabilities.
29/8/2024 22:36 A new non-parametric method to infer galaxy cluster masses from weak lensing: “a new, non-parametric method to infer deprojected 3D mass profiles M(r) of galaxy clusters from weak gravitational lensing observations…We provide an efficient implementation in Julia code that runs in a few milliseconds per galaxy cluster.”
12/8/2024 12:59 Fermions.jl: New Julia physics library: “Fermions.jl is a toolkit for designing and analysing second-quantised many-particle Hamiltonians of electrons, potentially interacting with each other.”
29/7/2024 11:00 GeoStats.jl: “An extensible framework for geospatial data science and geostatistical modeling fully written in Julia.” Also see the book.
29/7/2024 10:53 Geospatial Data Science with Julia: “best practices for writing clean, readable and performant code in geoscientific applications involving sophisticated representations of the (sub)surface of the Earth such as unstructured meshes made of 2D and 3D geometries.” Open source and CC licensed.
26/7/2024 17:28 waterlily.jl: “A differentiable and backend-agnostic Julia solver to simulate incompressible viscous flow and dynamic bodies”.
23/7/2024 23:23 Diagramming and Data Visualization with Julia: I didn’t know about Vizagrams.jl, an interesting Julia library for plotting and data visualization. It implements a kind of grammar of graphics, and looks powerful.
14/7/2024 15:47 The main thing in Julia 1.11: Bogumił Kamiński describes a new feature: the
@main macro, which defines an entry point.
11/7/2024 19:34 Rankings of Julia books on Amazon: Graphs of Amazon’s sales ranks of their books about the Julia programming language.
8/7/2024 10:46 Julia use in trading leads to massive speedup: Satvik writes on the Julia Discourse: “We use Julia for almost all numeric/data-oriented stuff now, and have moved a lot of the Python code to Julia…At this point 99% of new code I write is Julia, and for the company as a whole it’s about 50-50. The performance differential has become even more ridiculous, an experiment that used to cost ~$125 to run now costs ~.33 cents, and most of those improvements wouldn’t really have been possible in Python.”
1/7/2024 0:19 IdSet in Julia 1.11: A new public type in Julia 1.11 and what it’s good for. As a bonus, a useful summary of Julia’s various equality tests.
18/6/2024 14:12 Julia use in the development of audio codecs for WhatsApp, Instagram and Messenger.: Video in which engineers from Meta describe how they use Julia to develop advanced audio codecs for their communications applications.
3/4/2024 22:49 Mastering Efficient Array Operations with StaticArrays.jl in Julia: Good tutorial with benchmarks.
21/2/2024 7:12 New stack traces in Pluto: more colorful, less intimidating!: I recently wrote about the new features in Julia v1.10, including the friendlier, more useful stacktraces in the REPL. Now the amazing Fons van der Plas has released a new version of Pluto, the reactive computational notebook for Julia, with powerful and helpful stacktraces inspired by the new REPL improvements—they take error reporting to a new level.
5/1/2024 19:57 Comparing the Performance of Julia on CPUs versus GPUs and Julia-MPI versus Fortran-MPI: a case study with MPAS-Ocean (Version 7.1): “In the end, we were impressed by our experience with Julia. It did fulfill the promise of fast and convenient prototyping, with the ability to eventually run at high speeds on multiple high-performance architectures – after some effort and lessons learned by the developers.”
3/1/2024 17:23 Julia v1.10 Release Notes: Excellent progress, especially in package loading times. Watch for my LWN writeup, coming soon.
03/01/2024 14:40 Julia v1.10: Performance, a new parser, and more: My article about the Julia v1.10 release appeared today in LWN.
19/11/2023 7:30 Julia as a unifying end-to-end workflow language on the Frontier exascale system: “Julia emerges as a compelling high-performance and high-productivity workflow composition language, as measured on the fastest supercomputer in the world.”
25/10/2023 12:32 Practical Julia: My introduction to the best language for scientific computing.
Documentation and tutorials
DataFrame vs NamedTuple: a comparison: Informative comparison of the use of dataframes vs. named tuples to represent tables in Julia, with interesting examples of fast and slow code.
Storing vectors of vectors in DataFrames.jl: Extremely useful tutorial on preventing vectors from being expanded into multiple rows when applying transformations to dataframes.
Differentiation for Hackers: “The goal of this handbook is to demystify algorithmic differentiation, the tool that underlies modern machine learning.”
Metadata in DataFrames.jl: why and how?: Valuable and detailed introduction to this useful feature of DataFrames.jl, by one of its developers and the author of Julia for Data Analysis.
Parallel Computing and Scientific Machine Learning (SciML): Methods and Applications: “This book is a compilation of lecture notes from the MIT Course 18.337J/6.338J: Parallel Computing and Scientific Machine Learning…a live document, updating to continuously add the latest details on methods from the field of scientific machine learning and the latest techniques for high-performance computing.”
My understanding of object property access in Julia: Clarifies the use of fields and properties of composite objects.
Practical guide: how to contribute to open source Julia projects: This is helpful for those interested in making their first contribution to the ecosystem.
PlutoUI Demonstration: A live demonstration of PlutoUI controls, served with the PlutoSliderServer.
PSA: Thread-local state is no longer recommended: “Any code that relies on a specific threadid staying constant, or on a constant number of threads during execution, is bound to be incorrect.”
Julia macros for beginners: A clear introduction.
Successful Static Compilation of Julia Code for use in Production: “a successful experiment to statically compile a piece of Julia code into a small
.so library on Linux, which is then loaded from Python and used in training of a deep learning model.”
Filtering grouped data frames in DataFrames.jl: A helpful tutorial by Bogumił Kamiński.
Bayesian Estimation of Differential Equations: Tutorials showing how to use Turing.jl to estimate parameters of ODEs from data.
What does it mean that a data frame is a collection of rows?: The main developer of Dataframes.jl explains its interface in this illuminating article.
Fundamentals of Numerical Computation: “This is a revision of the textbook Fundamentals of Numerical Computation by Tobin A. Driscoll and Richard J. Braun. The book was originally written for MATLAB, but this resource has been adapted to suit Julia.” Text available free online.
Comparison of plotting packages: Newcomers (and others!) using Julia can be bewildered by the profusion of options for making plots and visualizations. Chris Rackauckas provides a useful summary of the pros and cons of all the major packages.
Python Criticism from a Julia Perspective: Contains, among other interesting nuggets, a description of a Julia REPL facility for discovering a list of methods that can act on a given combination of types (I had no idea).
Julia: The Greeks and Math operators at the command line via LaTeX: If you haven’t tried Julia, this may whet your appetite.
Learning to create a vector in Julia: Two ways to turn a multidimensional array into a Vector in Julia: one that makes a copy and one that uses an alias.
Setting up your Julia session: A tutorial about the Julia startup file.
Ref ref: “Today I want to discuss the Ref type defined in Base Julia. The reason is that it is often used in practice, but it is not immediately obvious what the design behind Ref is.”
Signal Processing with Julia Language: A tutorial series.
PrecompileTools.jl: Documentation and tutorials for PrecompileTools.jl, which “is designed to help reduce delay on first usage of Julia code. It can force precompilation of specific workloads…You can use PrecompileTools as a package developer, to reduce the latency experienced by users of your package for ‘typical’ workloads; you can also use PrecompileTools as a user, creating custom ‘Startup’ package(s) that precompile workloads important for your work.”
Guide for writing shell scripts in Julia: From 2019, but may still be useful.
GPU Programming: When, Why and How?: This course on using GPUs in general computing contains a section (“High-level language support”) with an overview of Julia and Python.
Pkg.jl and Julia Environments for Beginners: Exceptionally clear tutorial about Julia’s package manager.
My approach to named tuples in Julia: “I find it more natural to think of a NamedTuple as an anonymous struct, that optionally can be integer-indexed to get access to its components.”
Functional One-Liners in Julia: Introduction to currying used in conjunction with broadcasting, with examples.
Triangle frenzy: A case study using CUDA for some graphics calculations.
Using Julia on the HPC: A survey of simple examples of using Julia in HPC contexts.
Libraries
Changing Physics education with Julia: Interactivity in physics education; why Julia is an ideal language for physics education; applied to teaching dynamical systems and the DynamicalSystems library, of which the author is the maintainer, and his textbook.
SpeedyWeather: “a global spectral atmospheric model with simple physics which is developed as a research playground with an everything-flexible attitude as long as it is speedy…Why another model? You may ask. We believe that most currently available are stiff, difficult to use and extend, and therefore slow down research whereas a modern code in a modern language wouldn’t have to.”
Julia library for stylized terminal output: Create beautiful output in the terminal.
Bonito: “Bonito.jl is a pretty simple package allowing you to render HTML and serve it from within Julia and build up a communication bridge with the Browser.”
GridWorlds.jl: Help! I’m lost in the flatland!: “A package for creating grid world environments for reinforcement learning in Julia.“ Juliacon presentation here.
Handcalcs.jl: “This package supplies macros to generate LaTeX formatted strings from math[e]matical formulas.” For use in Pluto.
SuiteSparseGraphBLAS.jl: An Introduction: “This blog post serves a couple purposes. The first is to introduce Julia users to GraphBLAS, and the features and performance of the
SuiteSparseGraphBLAS.jl package. The second is an update on new features in versions 0.6 and 0.7 as well as a roadmap for the near future.”
PairPlots.jl: Julia package for making corner plots, the statistical visualization that lets you compare a collection of distributions all at once.
Swalbe.jl: A lattice Boltzmann solver for thin film hydrodynamics: A Julia program.
Strided.jl: Make broadcast operations faster.
DynamicQuantities.jl: Type stable units in Julia: Along the lines of Unitful, but storing dimensions as values rather than as parametric types. This leads to greater efficiency in many circumstances.
Trixi.jl: “Trixi.jl is a numerical simulation framework for conservation laws written in Julia. A key objective for the framework is to be useful to both scientists and students. Therefore, next to having an extensible design with a fast implementation, Trixi.jl is focused on being easy to use for new or inexperienced users, including the installation and postprocessing procedures.”
PlanetOrbits.jl: Tools for solving and displaying Keplerian orbits for exoplanets.: “The primary use case is mapping Keplerian orbital elements into Cartesian coordinates at different times. A Plots.jl recipe is included for easily plotting orbits.”
Introducing Braket.jl - Quantum Computing with Julia: “Braket.jl is a new, experimental package that lets you build quantum circuits and programs in Julia and run them on Amazon Braket.”
My Julia Book is in Libraries: giving me a warm feeling.
SciML: Differentiable Modeling and Simulation Combined with Machine Learning: A new hub for Julia’s SciML documentation.
Oxygen.jl: “Oxygen is a micro-framework built on top of the HTTP.jl library. Breathe easy knowing you can quickly spin up a web server with abstractions you’re already familiar with.” Supports streams and websockets.
Merly.jl: Micro framework for web programming in Julia: Seems similar to Oxygen, but hasn’t been updated since about 2020.
ImplicitPlots.jl: Julia package for the plotting of plane curves and surfaces: “Plot plane curves defined by an implicit function f(x,y)=0.”
Pandoc.jl: Pandoc Interface and Types in Julia: Run Pandoc and write Pandoc filters in Julia. Uses the json serialization, so won’t be as fast as Lua filters.
Microstructure.jl: “Microstructure.jl is a Julia package for fast and probabilistic microstructure imaging… under active development…ocuses on tissue microstructure estimation.”
About.jl: Provides the
about function, which prints attractively formatted information about any object.
TikzGraphs: Exploiting the superb TikZ system from Julia to create high-quality graph diagrams (“graph” in the node-edge sense) conveniently.
JuliaHEP: High energy physics packages. Includes compatibility layers and partial replacements for ROOT.
KittyTerminalImages: If you use the superb Kitty terminal emulator, this package is for you. It lets Julia display images directly in the terminal, using the Kitty protocol (not sixel, etc.).
Gnuplot.jl: Julia interface to gnuplot: This is a very well-thought-out way to use gnuplot from Julia (you need gnuplot installed), giving you the best of both worlds. For (the excellent) documentation, go to the
docs/src folder and browse the .md files, starting with basic.md.
Here’s why quantum computing could be the big break for the Julia Language: Introducing Yao.jl, a Julia library for quantum computing.
JuliaSymbolics: “JuliaSymbolics is the Julia organization dedicated to building a fully-featured and high performance Computer Algebra System (CAS) for the Julia programming language.”
Stipple: A reactive user interface library for use with Genie. Standard use is over a websocket, somewhat similarly to Phoenix Liveview. Seems quite useful for building interactive web applications with Julia, but Unfortunately undocumented, like most Julia packages.
Tidier.jl: “Tidier.jl is a data analysis package inspired by R’s tidyverse and crafted specifically for Julia.”
PureFun.jl: Immutable containers for Julia.
OhMyThreads: “OhMyThreads.jl is meant to be a simple, unambitious package that provides user-friendly ways of doing task-based multithreaded calculations in Julia. Most importantly, with a focus on data parallelism, it provides an API of higher-order functions (e.g. tmapreduce) as well as a macro API tasks? for … end (conceptually similar to threads?).”
JuliaAstroSim/AstroNbodySim.jl: “Unitful and differentiable gravitational N-body simulation code in Julia”.
FunSQL.jl: Julia library for compositional construction of SQL queries’
Yao: “Welcome to Yao, a Flexible, Extensible, Efficient Framework for Quantum Algorithm Design. Yao (幺) is the Chinese character for normalized but not orthogonal.”
PlutoSliderServer.jl: Web server to run just the
@bind parts of a Pluto.jl notebook.
Oxygen.jl: A breath of fresh air for programming web apps in Julia: A micro-framework that provides routing and request/response handling.
Other
Switching from Common Lisp to Julia: “A sufficiently rich parametric type system with multiple dispatch integrated into the language and supported by a JIT compiler is the secret weapon of Julia” and the core reason for the author’s adoption of the language for scientific computing.
2021_FortranCon Benchmarks: Comparison of of code and performance between Julia and Fortran on a 2D particle simulation.
Julia v1.8 Release Notes: Julia 1.8.0 is in beta. These release notes include many welcome enhancements. Several of the new features relate to the creation of sysimages, and appear to make it easier to produce smaller compiled code.
Generalizing Scientific Machine Learning and Differentiable Simulation Beyond Continuous models: Data-driven Physical Simulations Seminar Series talk by Chris Rackauckas.
Julia 1.9 Brings More Speed and Convenience: My article about the goodies in Julia v.1.9 appeared today in LWN.
Bridging HPC Communities through the Julia Programming Language: “The Julia programming language has evolved into a modern alternative to fill existing gaps in scientific computing and data science applications.”
From Common Lisp to Julia: A personal journey from CL to Julia from a graphics and games programmer. Interesting observations, badly in need of editing.
Solving one based indexing: Finally, a solution to the non-problem of 1-based indexing in Julia that should satisfy everybody.
Threadpools in Julia: My favorite new feature in Julia v.1.9: spawn as many tasks as you want, but keep a thread reserved for the REPL, so it continues to respond instantly.
Femtolisp: a lightweight, robust, scheme-like lisp implementation: The Julia parser up to Julia v1.10. “This project began with an attempt to write the fastest lisp interpreter I could in under 1000 lines of C.”
Automated Code Optimization with E-Graphs: “Can programmers implement their own high-level compiler optimizations for their domain-specific scientific programs, without the requirement of them being compiler experts at all? […] can symbolic mathematics do high-level compiler optimizations or vice-versa?”
LibPQ.jl: “LibPQ.jl is a Julia wrapper for the PostgreSQL libpq C library.”
The best Julia programming books going into 2023: Description of books the author has used plus notes about others, including books arriving in the near future.
Julia 1.9 Highlights: Julia v.1.9 is now officially released. I’ve been enjoying the 1.9 series since the beta releases. The new version offers significant performance improvements and is even more convenient for development.
Meshes.jl: Computational geometry and meshing algorithms in Julia
Julia for Biologists: “Major computational challenges exist in relation to the collection, curation, processing and analysis of large genomic and imaging datasets, as well as the simulation of larger and more realistic models in systems biology. Here we discuss how a relative newcomer among programming languages—Julia—is poised to meet the current and emerging demands in the computational biosciences and beyond. Speed, flexibility, a thriving package ecosystem and readability are major factors that make high-performance computing and data analysis available to an unprecedented degree. We highlight how Julia’s design is already enabling new ways of analyzing biological data and systems, and we provide a list of resources that can facilitate the transition into Julian computing.”
Inviscid and incompressible Navier-Stokes equations in 2D implemented in Julia and compiled to WASM: This is quite wonderful and amazing: a Julia fluid solver compiled to WASM and running in the browser. Users can create flow boundaries with the mouse.
JuliaCon 2023 Live Streaming: Some of the program of this year’s Julia conference will be streamed on YouTube, free to watch.
A Look at Communication-Intensive Performance in Julia: “if programmers properly balance the computation to communication ratio, Julia can actually outperform C/MPI in a cluster computing environment.”
Nonlinear Dynamics: “A Concise Introduction Interlaced with Code”.
Review of Interactive Visualization and Plotting with Julia by Zea: A knowledgeable author poorly served by a careless publisher.
Julia in the Wild: Examples: Case studies of Julia use in science, engineering, industry, and finance.
Julia: Project Workflow: Good ideas about organizing Julia projects, including how to incorporate Pluto notebooks.
Modern Julia Workflows: “Our purpose is to gather the hidden tips and tricks of Julia development, and make them easily accessible to beginners. We do not cover syntax, and assume that the reader is familiar enough with the basics of Julia. Instead, we focus on all the tools that can make the coding experience more pleasant and efficient.”
GitHub - JuliaDynamics/NonlinearDynamicsTextbook: coming soon: A repository for the book Nonlinear Dynamics.
C. Brenhin Keller: An assistant Professor of Earth Sciences at Dartmouth using Julia in research and teaching. Many links to Julia Earth science resources.
Julia 1.8 released: I’ve been using the betas for a while and they’ve been stable and responsive. The highlights in 1.8 are typed non-constant globals and improvements in precompilation, both significant for all users.
Julia REPL ↓ trick: Stefan Karpinski reveals a secret superpower in plain sight: “After evaluating a command from history in the REPL, you can press ↓ and get the next command after that one, so you can replay a sequence of commands by finding the first one and doing ↓⏎ repeatedly”.
Potential of the Julia programming language for high energy physics computing: “In this paper the applicability of using the Julia language for HEP research is explored, covering the different aspects that are important for HEP code development: runtime performance, handling of large projects, interface with legacy code, distributed computing, training, and ease of programming. The study shows that the HEP community would benefit from a large scale adoption of this programming language.”
The Essential Tools of Scientific Machine Learning: An overview of the state of packages and libraries for scientific ML as of 2019, not confined to Julia.
Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs: “Oceananigans.jl is a fast and friendly software package for the numerical simulation of incompressible, stratified, rotating fluid flows on CPUs and GPUs. Oceananigans.jl is fast and flexible enough for research yet simple enough for students and first-time programmers. Oceananigans.jl is being developed as part of the Climate Modeling Alliance project for the simulation of small-scale ocean physics at high-resolution that affect the evolution of Earth’s climate.”
An Interview With Dr. Lee Phillips Part Four: Science Freelance Writing And Practical Julia: We talk about how to break into freelance science writing and about the Julia programming language.
Julia: The Goldilocks language: Contains some interesting details about the origins and history of Julia, along with some odd remarks (“elements of the high-level functionality of MATLAB and R with the speed of C or Ruby”).
State of machine learning in Julia: …as of Jan, 2022.
Jack Dongarra, who made supercomputers usable, awarded 2021 ACM Turing prize: The creative force behind LINPACK and BLAS says that Julia is a good candidate for the next computing paradigm.
What’s great about Julia?: The other side of the coin revealed by the author of “What’s bad about Julia?”.
Pluto 0.17.6 Announced: The latest version of Pluto, the computational notebook for Julia, has some great new features, including a dark mode and the ability to print logging messages from running code in the notebook.
Switching from Common Lisp to Julia: Although written in the pre-1.0 Julia era, the author penetrates into the core of Julia’s uniqueness: “A sufficiently rich parametric type system with multiple dispatch integrated into the language and supported by a JIT compiler is the secret weapon of Julia.” An informative discussion of scientific computing in CL and Julia.
Fermi.jl: A Modern Design for Quantum Chemistry: “we introduce the quantum chemistry package Fermi.jl, which contains the first implementations of post-Hartree–Fock methods written in Julia. Its design makes use of many Julia core features, including multiple dispatch, metaprogramming, and interactive usage. Fermi.jl is a modular package, where new methods and implementations can be easily added to the existing code. Furthermore, it is designed to maximize code reusability by relying on general functions with specialized methods for particular cases.”
Practical Julia: The publisher’s page for my Julia book.
What’s the deal with Julia binary sizes?: Traces the huge decreases in the sizes of compiled binaries.
Why Julia is the most suitable language for science: Engaging presentation by the maintainer of the Julia dynamical systems package.
Extreme Multi-Threading: C++ and Julia 1.9 Integration: With Julia v.1.9 we can call Julia libraries from multi-threaded C++ programs, apparently. This article shows you how.
Macroeconomic Modeling: “The Federal Reserve Bank of New York publishes its trademark Dynamic Stochastic General Equilibrium models in Julia.”
Accuracy of tropical peat and non-peat fire forecasts enhanced by simulating hydrology: Fire forecasting using Flux.jl.
